PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930808.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 525aa    MW: 53570.6 Da    PI: 8.1805
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930808.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.48.6e-411272363119
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 
                     + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s        + +a+
  XP_010930808.1 127 ATKRSSKDRHTKVEGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGS--------SLSAP 213
                     689*****************************************************************99966666666666........33334 PP

             TCP  97 skksqksaasalnlakesrakar 119
                     ++ks  ++ ++l+la+++r++  
  XP_010930808.1 214 PSKSAPHSFHTLALAHHHRQDYE 236
                     44444455557777777775544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-38131235IPR005333Transcription factor, TCP
PROSITE profilePS5136928.194132186IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MERSDHRHGK GADGGGRAAG GGGGGPSNSN SSSGGTNSSR STSEQQQQQF HHQASSSGPS  60
SLDLVPFEGG APTGSFMGPI VHHHAGSARV DASLAISSSP TSKPDPTTPR PSSSSGPADP  120
SKKLPVATKR SSKDRHTKVE GRGRRIRMPA VCAARVFQLT RELGHKSDGE TIEWLLQQAE  180
PAIIAATGTG TIPANFSTLN ISLRSSGSSL SAPPSKSAPH SFHTLALAHH HRQDYEEGHD  240
AAAGISHSAM LGFHQLHHHH PAHQHHLLST DQMGTGLQSA GGSAGGGGGG GGGDSSADTY  300
LRKRFREDLF KEEQQQQQEG GGGGGAGPSS PSSASKDART GGLQSHQEPT ASAAGMARPS  360
GVLPATAMWA VAPNSGAGGA FWMLPVSGGP TAGPSEPSLW TFPASGHGQY RTGIPTAAAG  420
GTIQAPLQFM SRINIPGGLE SQGGRAVGAL PLGSMLLQQQ PGGGAAPQHL GLGISETNLG  480
MLAALNAYNR AGLTMSSEHH QSLDHHQAQQ RAADSGDDHH PTNSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11422GGRAAGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930808.10.0PREDICTED: transcription factor TCP8-like
TrEMBLA0A067LE961e-129A0A067LE96_JATCU; Uncharacterized protein
STRINGVIT_12s0035g00690.t011e-127(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.14e-45TCP family protein